PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905786
Common NameARALYDRAFT_905786
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 170aa    MW: 18503.1 Da    PI: 9.109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905786genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007185107123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+Cg  F+    L  H+r+H
   905786  85 HTCPICGLDFPIGQALGGHMRKH 107
              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.44E-734107No hitNo description
PfamPF139128.2E-93558IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0783659IPR007087Zinc finger, C2H2
SMARTSM003552.93658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139122.8E-885108IPR007087Zinc finger, C2H2
SMARTSM003550.2285107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.51285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVAESDNLDP TADTAANCLM LLSKVGEHDG GKKRVFRCKT CKRDFFSFQA LGGHRASHTK  60
LINSDDKSLP GSLKKKPKTT TTSSHTCPIC GLDFPIGQAL GGHMRKHRNE KEQEKASNEL  120
VTRSFLPETT TVTTLKKSSS GKRVACLDLD STSVESLVNT ELELGRTMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278LKKKPKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00393DAPTransfer from AT3G46070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap905786
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6983080.0HQ698308.1 Arabidopsis thaliana ecotype Landsberg erecta chromosome 3 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877452.11e-122zinc finger protein ZAT8
SwissprotQ9LX859e-77ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLD7LMV01e-121D7LMV0_ARALL; Zinc finger family protein
STRINGscaffold_501490.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.15e-75C2H2 family protein