PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905851
Common NameARALYDRAFT_905851
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 98aa    MW: 11332 Da    PI: 5.914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905851genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.95.8e-081151648
     NAM  6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
            +F+Pt++e++++yLk+k++g+++    +i   d+y +e w L 
  905851 11 HFDPTNQEVINDYLKRKLRGEDCGD--FIVMKDVYAMESWLLL 51
            8*********************766..6788899999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-61154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MEYCEEDEEI HFDPTNQEVI NDYLKRKLRG EDCGDFIVMK DVYAMESWLL LLFSRKTSGI  60
TFRQELRPPR RRLMVVSTRS GRSPETTPMA STAKIIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap905851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1333141e-48AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankCP0026861e-48CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880870.12e-20NAC domain-containing protein 55
TrEMBLD7LN193e-66D7LN19_ARALL; Predicted protein
STRINGscaffold_501555.15e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358