PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

905889

Common Name

ARALYDRAFT_905889

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 109aa MW: 12621.7 Da PI: 9.3725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
905889	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.1	1.5e-13	8	98	2	90
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +kvlt sd + l+lpkk +e++ +++++++ l d +++s++v++ +k s+ry++ +GW e +a +Lk+gD + ++l++ ++f 905889 8 EKVLTDSDLCHGAKLYLPKKQIEKIlstienfA-MPPSGFQVELLD-NNKSYSVTI--KKDSRRYYMCSGWTEIREARNLKTGDKIRLYLQD-TKF 98 799*********************9999964.456889999.89****..**************************999865.454 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-16	2	95	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-16	3	98	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.71E-15	5	102	No hit	No description
PROSITE profile	PS50863	8.966	7	108	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-7	7	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-11	8	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MDPNKMLEKV LTDSDLCHGA KLYLPKKQIE KILSTIENFA MPPSGFQVEL LDNNKSYSVT 60 IKKDSRRYYM CSGWTEIREA RNLKTGDKIR LYLQDTKFIF TFNYALSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	905889

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D7LN55	6e-75	D7LN55_ARALL; Uncharacterized protein
STRING	scaffold_501593.1	1e-75	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29353	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08985.1	3e-32	B3 family protein

Link Out ? help Back to Top
Phytozome	905889
Entrez Gene	9313584