PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905966
Common NameARALYDRAFT_905966
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 171aa    MW: 19428.8 Da    PI: 10.2107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905966genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.62.9e-20601632110
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
             ppGf+F Ptd+el+   L+++ ++  l++   +++v+iy+++P++L +k+++ + kew+f s+r   ++ gkr++  +++gyW+    +k++ + ++ ++g k
  905966  60 PPGFKFVPTDQELI---LQNNKDSWLLKV--PVHHVKIYESNPQQLSEKYEKgNYKEWFFMSERIMISKGGKRQKHGVSAGYWNPYRASKKINA-GNGVIGYK 156
             9*************...666655555555..69*************965544266699999999999999******99***************9.9999**** PP

     NAM 104 ktLvfyk 110
             + L +y 
  905966 157 TALDYYI 163
             ******4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-2251163IPR003441NAC domain
PROSITE profilePS5100518.87659170IPR003441NAC domain
PfamPF023652.1E-960166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEIPPRNKRK ERSSPERQKQ PPELQTQPPS HNPDPNNPSS SSSSVAENFS SSSTKPFIFP  60
PGFKFVPTDQ ELILQNNKDS WLLKVPVHHV KIYESNPQQL SEKYEKGNYK EWFFMSERIM  120
ISKGGKRQKH GVSAGYWNPY RASKKINAGN GVIGYKTALD YYILGNNQTT *
Cis-element ? help Back to Top
SourceLink
PlantRegMap905966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431407.15e-67PREDICTED: NAC transcription factor 29-like
TrEMBLD7LND31e-121D7LND3_ARALL; Uncharacterized protein
STRINGscaffold_501670.11e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.15e-49NAC domain containing protein 64