PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9060
Common NameMICPUCDRAFT_9060
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 115aa    MW: 13410.1 Da    PI: 10.6014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9060genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091261845
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwq 45
                     ++G++ W+++a +++ gRt+ qc  rw+
             9060  1 KHGNR-WAAVADEFP-GRTGQQCAQRWR 26
                     7****.*********.***********8 PP
2Myb_DNA-binding51.42.5e-163580148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++WT++Ed ll  +v++lG++ W+ Ia+ ++ gRt+ qc  rw+ +l
             9060 35 KDKWTEDEDVLLHALVEKLGTR-WAHIAESIP-GRTDQQCMGRWRRHL 80
                     689*******************.*********.************986 PP
3Myb_DNA-binding28.63.4e-0986114130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      r++W+t Ed  l+++ +q+G++ W++Ia+ 
             9060  86 RDAWSTKEDRALAELKHQHGTN-WSSIAKS 114
                      789*****************99.*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.3E-8126IPR001005SANT/Myb domain
CDDcd001673.56E-5126No hitNo description
PROSITE profilePS5129414.377129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-15141IPR009057Homeodomain-like
SMARTSM007176.1131IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-25981IPR009057Homeodomain-like
PROSITE profilePS5129425.8873084IPR017930Myb domain
SMARTSM007177.9E-163482IPR001005SANT/Myb domain
CDDcd001672.31E-113780No hitNo description
PfamPF139212.4E-173897No hitNo description
Gene3DG3DSA:1.10.10.601.3E-214287IPR009057Homeodomain-like
SuperFamilySSF466893.12E-1170115IPR009057Homeodomain-like
PROSITE profilePS512949.22885115IPR017930Myb domain
CDDcd001670.0046488115No hitNo description
Gene3DG3DSA:1.10.10.601.9E-988115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
KHGNRWAAVA DEFPGRTGQQ CAQRWRHKVN PSIRKDKWTE DEDVLLHALV EKLGTRWAHI  60
AESIPGRTDQ QCMGRWRRHL DPKVKRDAWS TKEDRALAEL KHQHGTNWSS IAKSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-2451156159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-2451156159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057544.14e-80predicted protein, partial
TrEMBLC1MNA48e-79C1MNA4_MICPC; Predicted protein (Fragment)
STRINGXP_003057544.11e-79(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-29myb domain protein 3r-3
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]