PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

906311

Common Name

ARALYDRAFT_906311

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 237aa MW: 25678.1 Da PI: 7.5999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
906311	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.2	9.5e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++l+ 906311 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETVLR 103 6***********************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.523	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGFA 120 GFPSPTSDEA SEICTEMLNL RKDDDSGDRN IYHHCRFSSS RSRSTASPPK RKRLSSELDL 180 SLIPTFPIKT VPFKEDTPSM YSEESVTTVS FRDNNAGDRY VRGGGGETAK LLNLFA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	906311

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085761	0.0	AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876006.1	1e-176	LOB domain-containing protein 38
Swissprot	Q9SN23	1e-155	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	D7LT02	1e-174	D7LT02_ARALL; LOB domain protein 38
STRING	scaffold_502015.1	1e-175	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-147	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	906311
Entrez Gene	9312074