PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906780
Common NameARALYDRAFT_906780
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 143aa    MW: 16511.4 Da    PI: 7.2943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906780genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122143123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y C+ C + Fs+   L  H++ H
   906780 21 YICEFCERGFSNAQALGGHMNIH 43
             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-61747IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-71847No hitNo description
PROSITE profilePS5015711.242148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNRKYLDRRS YSWSGSQARP YICEFCERGF SNAQALGGHM NIHRKDRAKL RQANLKEEDS  60
EEAICTTSRN RFEQELIELP FFVDTVGPRR KEEDDRSKNC SGDEEEKKMR ILQNALSQSA  120
EVIDLELRLG LDPYRKSTST ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMap906780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329600.0AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ0566220.0DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876227.11e-102transcriptional regulator TAC1
TrEMBLD7LUM71e-101D7LUM7_ARALL; Zinc finger family protein
STRINGscaffold_502484.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-95C2H2 family protein