PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 907523
Common NameARALYDRAFT_907523
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 922aa    MW: 103248 Da    PI: 5.7552
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
907523genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.14.5e-42121197278
             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
             Cqve+C +dls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  907523 121 CQVENCGVDLSKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANP 197
             **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-34116182IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496118195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-40120200IPR004333Transcription factor, SBP-box
PfamPF031104.1E-31121194IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.4E-6707812IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.24E-6709810IPR020683Ankyrin repeat-containing domain
CDDcd002048.79E-8712810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MEARIEGEEE GHSLEYGFSG KRSVEWDLND WKWNGDLFVA TQLNHGSSNS SSTCSDEAIV  60
EIMEKKKKRG AVTVIAMEED NLRDGDDDAH RLTLNLGGNI EGNGAKKTKL GGGIPSRAIS  120
CQVENCGVDL SKVKDYHRRH KVCEMHSKAT SALVGGIMQR FCQQCSRFHV LEEFDEGKRS  180
CRRRLAGHNK RRRKANPDTI GNGNPLSDGQ TSNYLLITLL KILSNLHSNQ SDQTGDQDLL  240
SQLLKSLVSQ AGEHIGKNLV GLLQGGGGVQ ASQNIGNSSD LLSLEQAPRE NIKHHSVPET  300
HWQEVFANGA QETAAPDRPE KQVKMNDFDL NDIYIDSDDT TDIERSSAPP TNPATSSLDY  360
HQDSRQSSPP QTSRRNSDSA SDQSPSSSGG DAQSRTDRIV FKLFGKEPND FPVALRGQIF  420
NWLAHTPTDM ESYIRPGCIV LTIYLRQDEA SWEELCCDLS FSLRRLLDLS DDPLWTDGWI  480
YLRVQNQLAF AFDGQVVLDT SLPLRSHDYS QIITVRPLAV TRKAQFTVKG INLRRHGTRL  540
LCAVEGTYLV QEATQGVMEE RDDLRVNNEI DFVKFSCEMP IASGRGFMEI EDQGGLSSSY  600
FPFIVSEDED VCSEIRRLES TLEFTGTDSA MQAMDFIHEI GWLLHRSELK SRLAASDHNP  660
EDLFPLIRFK FLVEYSMDRE WYAVIKKLLN ILFEEGTVDP SPDAALSELC LLHRAVRKNS  720
KPMVEMLLRF IPKKKNQTSS GLFRPDAAGP GGLTPLHIAA GKDGSEDVLD ALTEDPEMIG  780
IQAWKISQDN TGFTPEDYAR LRGHFSYIHL VQRKLNRKPT AEEHVVVNIP ESFNIEHKQE  840
KRSLMDSSSL SISQINQCKL CDHKRVFVTT QHKSLAYRPA MLSMVAIAAV CVCVALLFKS  900
CPEVLYVFQP FRWELLEYGT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A7e-33118175360squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00060PBMTransfer from AT3G60030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap907523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1320960.0AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878311.10.0squamosa promoter-binding-like protein 12
RefseqXP_020880464.10.0squamosa promoter-binding-like protein 12
RefseqXP_020880465.10.0squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLD7LWK10.0D7LWK1_ARALL; Uncharacterized protein
STRINGscaffold_503227.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]