PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

907816

Common Name

ARALYDRAFT_907816

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRAS

Protein Properties

Length: 97aa MW: 10776.2 Da PI: 5.1314

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
907816	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	42.7	8.8e-14	4	75	212	289
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErel 289 rl+d + + e+L+++++l+P++++vveq +++ +++sFl rf+eal+yy + l +l++es er +vE+ + 907816 4 RLYDVTRND----LETLEILRKLKPNLITVVEQKLSYdDGGSFLGRFVEALQYYYSA---LGDGLGEESGERFTVEQIV 75 444332222....569*******************8999*******99764...577788889*****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.236	1	96	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-11	4	75	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MQHRLYDVTR NDLETLEILR KLKPNLITVV EQKLSYDDGG SFLGRFVEAL QYYYSALGDG 60 LGEESGERFT VEQIVSSCAV VITGSRLARG VKMDKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-19	1	73	220	293	Protein SCARECROW
5b3h_A	4e-19	1	73	219	292	Protein SCARECROW
5b3h_D	4e-19	1	73	219	292	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	907816

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017067	1e-58	AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBank	BT029760	1e-58	BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBank	CP002688	1e-58	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199007.1	6e-39	GRAS family transcription factor
Swissprot	Q9FHZ1	6e-40	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	D7LT61	3e-63	D7LT61_ARALL; Uncharacterized protein
STRING	scaffold_503520.1	4e-64	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	2e-42	GRAS family protein

Link Out ? help Back to Top
Phytozome	907816
Entrez Gene	9314526

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]