PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

908412

Common Name

ARALYDRAFT_908412

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 266aa MW: 29391 Da PI: 6.9271

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
908412	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.4e-30	80	133	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl 908412 80 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 133 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	77	136	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-20	77	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-31	79	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	81	133	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-8	83	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRDNSNSGQP LPQTTPPQPN 60 SSTEFAGDST GDEPARTLKR PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT 120 RENVASHLQK YRLYLKRMQS GGGGGGGGDS DHLFASSPVP PHFLHQTSRQ SSDLFIPSLV 180 PISTQQQHIA APPSQFLHRQ MSAVNFTSPT KATDQAMFLA RQQSQLQQPV FRPSSLHLHS 240 QVANYTQDLD SGAKTVLTLF PTRDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-32	80	136	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00056	PBM	Transfer from AT5G05090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	908412

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005245	0.0	AB005245.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13.
GenBank	AY093188	0.0	AY093188.1 Arabidopsis thaliana unknown protein (At5g05090) mRNA, complete cds.
GenBank	BT006289	0.0	BT006289.1 Arabidopsis thaliana At5g05090 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871136.1	0.0	transcription factor MYBC1
Swissprot	O22210	3e-56	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	D7LYA4	0.0	D7LYA4_ARALL; Myb family transcription factor
STRING	scaffold_600469.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	1e-149	G2-like family protein

Link Out ? help Back to Top
Phytozome	908412
Entrez Gene	9309261

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]