PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 908528
Common NameARALYDRAFT_908528
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 568aa    MW: 63893.9 Da    PI: 7.6722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
908528genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07369410240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE + l ++ +++++g   +W+ I++++g+gR+ +++
           908528 369 KPWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGTGRSVEEI 410
                      69***********************************99876 PP
2Myb_DNA-binding27.19.8e-09511554445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
           908528 511 WSAVQERALVQALKTFPKEtnqRWERVATAVP-GKTMNQCKKKFA 554
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-2069178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.8E-2096199IPR001623DnaJ domain
SMARTSM002717.7E-1599174IPR001623DnaJ domain
PROSITE profilePS5007617.756100182IPR001623DnaJ domain
PfamPF002262.5E-17100179IPR001623DnaJ domain
CDDcd062573.02E-13100171IPR001623DnaJ domain
PRINTSPR006255.5E-8105123IPR001623DnaJ domain
PRINTSPR006255.5E-8123138IPR001623DnaJ domain
PRINTSPR006255.5E-8154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.4E-4362411IPR009057Homeodomain-like
PROSITE profilePS500905.97363418IPR017877Myb-like domain
SMARTSM007171.1E-4367420IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-7369412IPR009057Homeodomain-like
CDDcd001672.47E-4370410No hitNo description
SMARTSM007179.9E-9507559IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-9509563IPR009057Homeodomain-like
CDDcd001678.47E-7511557No hitNo description
Gene3DG3DSA:1.10.10.602.2E-5511556IPR009057Homeodomain-like
PfamPF002493.8E-7511555IPR001005SANT/Myb domain
PROSITE profilePS500907.131511557IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSSELK DGQALYASSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA  60
TSKNEDTDKK VPKEKDSEYI PSYDSHNIKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL AEETEEAKQA KKDEIESHFK LIQEAYEVLM DPTKRRIFDS  180
TDEFDDKVPT DCAPQDFFKV FGPAFKRNAR WSNSPLPDLG DEKPAIEEEK RRKEEEAKRA  240
AEAALLHKRA KEKEKKLLRK ERSRLRILSA PVLSQRLLSI SDEHVEDLCM SLNTEQLRKL  300
CDKMENKEGL ALAKVIKNGN SIDDDDEIEV KEEKEEEEVQ VAVKQNGHIE ANGHVEAKVN  360
TATHQKKEKP WSKEEIDMLR KGTTKFPKGT SQRWEVISEY IGTGRSVEEI LKATKTILLQ  420
KPDSAKAFDS FLEKRKPAAS IASPLSTREE LGEPIIPIKP HEENNSAKTE TAEQNGKSEE  480
NNNSNGKSEE NNNSNGISEP DTGAGSDPDG WSAVQERALV QALKTFPKET NQRWERVATA  540
VPGKTMNQCK KKFAELKDII RTKKPTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap908528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293950.0AK229395.1 Arabidopsis thaliana mRNA for cell division related protein-like, partial cds, clone: RAFL16-64-C21.
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879359.10.0dnaJ homolog subfamily C member 2
TrEMBLD7LZ390.0D7LZ39_ARALL; Uncharacterized protein
STRINGscaffold_600585.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-158DnaJ domain ;Myb-like DNA-binding domain