PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 908707
Common NameARALYDRAFT_908707
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 207aa    MW: 23162.3 Da    PI: 4.3939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
908707genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-17108158255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  908707 108 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 158
             7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-31107167IPR001471AP2/ERF domain
PfamPF008472.7E-11108158IPR001471AP2/ERF domain
SMARTSM003808.3E-36108172IPR001471AP2/ERF domain
CDDcd000182.54E-29108166No hitNo description
SuperFamilySSF541711.83E-22108167IPR016177DNA-binding domain
PROSITE profilePS5103224.487108166IPR001471AP2/ERF domain
PRINTSPR003673.8E-13109120IPR001471AP2/ERF domain
PRINTSPR003673.8E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MASFEESSDL EAIQNHLFED FLVCDGFMGD FDFDASFVSG LWCIEPQVPK QEPDSPVLDP  60
DSFVNEFLQV EGESSSSSPE LNSSSSTSET DQSVKKAERF EEEEEARHYR GVRRRPWGKF  120
AAEIRDPAKK GSRIWLGTFE SDVDAARAYD CAAFKLRGRK AVLNFPLDAG KYEAPENSGR  180
KRKRSDVQEE LQRTQSNSSS SSCDAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-29105167264ATERF1
3gcc_A9e-29105167264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap908707
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2928600.0AY292860.1 Arabidopsis lyrata subsp. lyrata zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP14 (GRP14), pollen specific glycine-rich protein GRP18 (GRP18), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), and pollen specific glycine-rich protein GRP20 (GRP20) genes, complete cds; glycine/proline-rich protein (Al5g07570) gene, partial cds; Al5g07580 pseudogene, complete sequence; and WD repeat-like protein (Al5g07590), oleosin (Al5g07600), and F box protein family (Al5g07610) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871278.11e-149ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-127EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLD7M0K51e-148D7M0K5_ARALL; AP2 transcription factor
STRINGscaffold_600764.11e-149(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-112ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]