PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

908782

Common Name

ARALYDRAFT_908782

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 241aa MW: 24777.7 Da PI: 10.4573

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
908782	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.5e-38	25	193	2	119
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg............. 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + 908782 25 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvraeegesggg 123 79**************************************************************99999777.2222222222220...12334444445566 PP TCP 89 ....................................................kaaksaakskksqksaasalnlakesrakar 119 + ++ ++l + ++++++a+ 908782 124 gggggltvghtmgtslmggggsggfwavparpdfgqvwsfaagappemvfaqQ-------------QQPATLFVRHQQQQQAS 193 77777777777777777777777777777777777777654433333333322.............22222333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	31	85	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-32	31	135	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042752	Biological Process	regulation of circadian rhythm
GO:0043433	Biological Process	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MANNDGAVTN GVIIEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR 60 ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL STSSPFTLGK RVVRAEEGES 120 GGGGGGGGLT VGHTMGTSLM GGGGSGGFWA VPARPDFGQV WSFAAGAPPE MVFAQQQQPA 180 TLFVRHQQQQ QASAAAAAAM GEASAARVGN YLPGHHLNLL ASLSGGANGS GRREDDHDPR 240 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00499	DAP	Transfer from AT5G08330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	908782

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF412074	0.0	AF412074.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds.
GenBank	AL392174	0.0	AL392174.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project).
GenBank	AY072620	0.0	AY072620.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871319.1	1e-174	transcription factor TCP21
Swissprot	Q9FTA2	1e-133	TCP21_ARATH; Transcription factor TCP21
TrEMBL	D7M1A9	1e-173	D7M1A9_ARALL; Uncharacterized protein
STRING	scaffold_600839.1	1e-174	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-87	TCP family protein

Link Out ? help Back to Top
Phytozome	908782
Entrez Gene	9307389

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]