PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 909450
Common NameARALYDRAFT_909450
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 135aa    MW: 15323.3 Da    PI: 5.2169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
909450genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.4e-201095194
            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
            ff+v+   +  +s+ + +p+++  +h ++ + +kt++l+   g+sW+v +  + k++++++++GW +Fv +n+L++g++++F +dg+++    v
  909450 10 FFSVF--LSQYNSNSFLIPRSYY-DH-LPRRLPKTVILMGNGGKSWKVAM--KSKRDQVYFEQGWANFVAENELRDGEVLTFVFDGHRCY--EV 95
            66777..444455568*******.55.3466999****************..99999**************************9987666..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-227103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-217102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.29E-17898No hitNo description
PROSITE profilePS5086314.4528101IPR003340B3 DNA binding domain
PfamPF023623.1E-171095IPR003340B3 DNA binding domain
SMARTSM010193.2E-1610101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MALSDVLPRF FSVFLSQYNS NSFLIPRSYY DHLPRRLPKT VILMGNGGKS WKVAMKSKRD  60
QVYFEQGWAN FVAENELRDG EVLTFVFDGH RCYEVSIYTR GGCKETRAAI EVEEISDETA  120
SDYSCDSIVS VIQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-18910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap909450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873693.13e-97B3 domain-containing protein At3g06220
SwissprotQ1PES77e-64Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLD7M6N47e-96D7M6N4_ARALL; Uncharacterized protein
STRINGscaffold_601507.11e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-66B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]