PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 911098
Common NameARALYDRAFT_911098
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 484aa    MW: 53765.8 Da    PI: 4.9563
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
911098genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43.1e-1041044761373
    GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
             lv+lL+++Aea +  +++  l++ +Larl++l+sp + ++m+Rlaa+ft++L++   r    ++   +  +++ ++++++++a++l++++sP+++f++lta q
  911098 104 LVHLLVAAAEASTGANKSreLTRVILARLKDLVSPGDrTNMERLAAHFTNGLSKLFER---DIVLRPQQHRDDVYDQADVISAFELLQNMSPYVNFGYLTATQ 203
             689********9986665459**************9989*****************99...555344444444456*************************** PP

    GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
             aIleav+ e+r+Hi+D+di++G+QW++L+qaL s++ gp   +lRiT+++++++g  s  +++etg+rL+ fAe++g pf+++     +++++++++L++ +g
  911098 204 AILEAVKYERRIHIVDYDITEGVQWASLMQALVSKNTGPSaqHLRITALSRATNGkkSIAAVQETGRRLTAFAESIGQPFSYHH-CKLDTNAFSTSSLKLVRG 305
             ************************************665446*********999988999***********************9.6889************** PP

    GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
             Ea+++n++l+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+l+ ++ +r  vEr+++g+++ n+++  
  911098 306 EAVVINCMLHLPRFRNQTPNSVI---SFLSEAKTLNPKLVTLVHEEVGLmGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARGYVERVFIGPWVANWLTRI 405
             ***************99888888...9*********************99***************************************************** PP

    GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
             +a+  ++ e+l++W ++le+ GFkp+++s  + +qaklll+ ++ dgy vee  ++ lvlgWk+r+Lvs+S+W
  911098 406 TAD-DAEVESLASWPQWLETNGFKPMEVSFANRCQAKLLLSLFN-DGYIVEELgQNGLVLGWKSRRLVSASFW 476
             **9.999*************************************.******98789999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.5578457IPR005202Transcription factor GRAS
PfamPF035141.1E-101104476IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.802.3E-4134214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDYPYEDFLD LFFSTNTDTL ATAASTSSCG YRLNDLDIDW DCDFRDVIES IMGDEGAMME  60
PESESVPMLH GQEGLCNSAS TSLSLADGVS VEEPKTDESK GLRLVHLLVA AAEASTGANK  120
SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLFE RDIVLRPQQH RDDVYDQADV  180
ISAFELLQNM SPYVNFGYLT ATQAILEAVK YERRIHIVDY DITEGVQWAS LMQALVSKNT  240
GPSAQHLRIT ALSRATNGKK SIAAVQETGR RLTAFAESIG QPFSYHHCKL DTNAFSTSSL  300
KLVRGEAVVI NCMLHLPRFR NQTPNSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR  360
FMDLLHQFSA IFDSLEAGLS IANPARGYVE RVFIGPWVAN WLTRITADDA EVESLASWPQ  420
WLETNGFKPM EVSFANRCQA KLLLSLFNDG YIVEELGQNG LVLGWKSRRL VSASFWASHE  480
SNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-41914766377Protein SCARECROW
5b3h_D1e-41914766377Protein SCARECROW
5hyz_A1e-4114547641374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap911098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0802520.0AL080252.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project).
GenBankAL1615100.0AL161510.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872385.20.0scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLD7M8D20.0D7M8D2_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_603155.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein