PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 911716
Common NameARALYDRAFT_911716
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 100aa    MW: 11838.5 Da    PI: 11.807
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
911716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.99.5e-131541228
  G2-like  2 prlrWtpeLHerFveaveqLGGsekAt 28
             prlrW+++LH++Fv+aveqLGG+++A 
   911716 15 PRLRWNSDLHNSFVQAVEQLGGENRAS 41
             8************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-101141IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-71540IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA SSWKNPCKKH IQSLAEKILA  60
KRSVRVTGQV TWWQFQQYLH NYQRLRGNAN FFQNHQRFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMap911716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740212e-63AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615012e-63AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026872e-63CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878875.11e-51protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLD7M1R94e-67D7M1R9_ARALL; Uncharacterized protein
STRINGscaffold_603773.16e-68(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-16G2-like family protein