PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 911877
Common NameARALYDRAFT_911877
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 481aa    MW: 53731.1 Da    PI: 8.7673
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
911877genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.18.4e-152451457
              HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
              +Le+++++++yp+++++ +LA+++gLte+qV+ WF+ rR k+k+
    911877  2 ALENFYNEHKYPTEDMKGKLAEEVGLTEKQVSGWFCHRRLKDKR 45
              79****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.803146IPR001356Homeobox domain
SMARTSM003891.4E-6150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-15246IPR009057Homeodomain-like
PfamPF000463.6E-12245IPR001356Homeobox domain
SuperFamilySSF466897.7E-13255IPR009057Homeodomain-like
CDDcd000862.20E-12246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MALENFYNEH KYPTEDMKGK LAEEVGLTEK QVSGWFCHRR LKDKRHVKED GNAVGSQDRS  60
SVVLQDRGSG LRQDSCGSTK QTDYWNPKPR EVESQRLYGG SYMGNADGED STSSDRSSSL  120
HKNLVSSKDG IRDVESSRYV AHKDVIQNPQ VMRSYGYNKP SGYLKVKGES ENFAITAVKR  180
QLGRQYQEDG PPLGVEFDPL PPGAFEPQTN TIVQEPIYVG NQRRSHPPHV LGTRKSFNPG  240
PSYELARKSK MHSPDPDSED DDDDDDDNIM VGMEPGLRDK KSLGEPRRKS PSPSFYNSVP  300
HHKSFKETLK GSPREISVTN SKNGRISSKS WAEGSRNNMI ANFHNLSGSN IETNQSHDYD  360
KHIFNGGRKT GYLTKSSKLL PPSRSRSPDS MDRGPSSGMA GKYHGERNQM KTHREKLHST  420
DEPPVAKRVK HGYIQQVYAP KSSYSEILER KSQINRSGVE LPTSLSGDDE TDESSSSSMD  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap911877
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412960.0AJ441296.1 Arabidopsis thaliana mRNA for homeodomain protein 14 (hd-14 gene).
GenBankBT0263720.0BT026372.1 Arabidopsis thaliana At4g03250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874873.20.0uncharacterized protein LOC9310940
TrEMBLD7M2Q80.0D7M2Q8_ARALL; Homeobox-leucine zipper family protein
STRINGscaffold_603934.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.10.0HB-other family protein