PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

911958

Common Name

ARALYDRAFT_911958

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HB-other

Protein Properties

Length: 954aa MW: 105216 Da PI: 9.1508

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
911958	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.7e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k 911958 66 KRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRK 122 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.572	63	123	IPR001356	Homeobox domain
SMART	SM00389	5.9E-5	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-6	66	127	IPR009057	Homeodomain-like
CDD	cd00086	8.93E-4	66	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-5	66	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.9E-5	228	323	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	4.71E-6	231	324	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL 60 SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA LFGITVAQVR EFFVTQKTRV 120 RKQVRLSREK VIVSNTHALQ EDGVLENSNA TNHVDPVPLN STHPEACSIS WGEGETVAFM 180 PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI 240 LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK 300 GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGRSE 360 NVRRFESSQG PKLLLTSADD STKKQMLGSN PSYNKERRKV QMVEQPGQKA AGKSPQTVRI 420 GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SRAVVPEKPL ALQSAKDSLP 480 SQNNEAKSED TPVLSAVQPV NEPLAGQAVN GPLAGQPVNG PLAVQPVNGP SGGQPVNGPS 540 AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP LGMELDELWR 600 VAAGGNSKEA DVQRNRNRRE RETLYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE 660 ESLTEPQDSL DERRTAAGAA TTSSSLSSPE PDLELLAALL KNPDLVYALT SGKPRNLAGQ 720 DMIKLLDVIK TGAPHSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ 780 VGAAVARSGA QLRVASMQWH QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQAKLHHNL 840 HLQQQQPIST TSYAVREPVG QMGTATSGSW RSQQSQNSYY SHQENEIASA SQVSSYQGNN 900 QYMSSNPGYE SWSPDNSPSR NHPNMRGQQQ QQAASRKHDS STHPYWNQNK RWR*

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL  60
SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA LFGITVAQVR EFFVTQKTRV  120
RKQVRLSREK VIVSNTHALQ EDGVLENSNA TNHVDPVPLN STHPEACSIS WGEGETVAFM  180
PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI  240
LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK  300
GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGRSE  360
NVRRFESSQG PKLLLTSADD STKKQMLGSN PSYNKERRKV QMVEQPGQKA AGKSPQTVRI  420
GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SRAVVPEKPL ALQSAKDSLP  480
SQNNEAKSED TPVLSAVQPV NEPLAGQAVN GPLAGQPVNG PLAVQPVNGP SGGQPVNGPS  540
AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP LGMELDELWR  600
VAAGGNSKEA DVQRNRNRRE RETLYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE  660
ESLTEPQDSL DERRTAAGAA TTSSSLSSPE PDLELLAALL KNPDLVYALT SGKPRNLAGQ  720
DMIKLLDVIK TGAPHSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ  780
VGAAVARSGA QLRVASMQWH QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQAKLHHNL  840
HLQQQQPIST TSYAVREPVG QMGTATSGSW RSQQSQNSYY SHQENEIASA SQVSSYQGNN  900
QYMSSNPGYE SWSPDNSPSR NHPNMRGQQQ QQAASRKHDS STHPYWNQNK RWR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	911958

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872830.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	D7M3G5	0.0	D7M3G5_ARALL; Uncharacterized protein
STRING	scaffold_604015.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	911958
Entrez Gene	9310977

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]