PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

912597

Common Name

ARALYDRAFT_912597

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 12097.5 Da PI: 11.1251

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
912597	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.8	8.9e-21	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri++ +r++ f+kR+ng+lKKA+EL +LC++ va+i+fs++gkl+ + 912597 9 KRINDRQQRNIAFAKRKNGLLKKAYELFILCNVPVALILFSPSGKLFVF 57 79********************************************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.133	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-26	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.72E-23	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	8.20E-23	2	58	No hit	No description
PRINTS	PR00404	8.3E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-20	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-21	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MGRVKIQIKR INDRQQRNIA FAKRKNGLLK KAYELFILCN VPVALILFSP SGKLFVFYAK 60 ARYMYINIVS LPKQITFSLS SSSFNSNILL FHHISSINCF VINLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	6e-17	1	57	1	57	MEF2 CHIMERA
6byy_B	6e-17	1	57	1	57	MEF2 CHIMERA
6byy_C	6e-17	1	57	1	57	MEF2 CHIMERA
6byy_D	6e-17	1	57	1	57	MEF2 CHIMERA
6bz1_A	6e-17	1	57	1	57	MEF2 CHIMERA
6bz1_B	6e-17	1	57	1	57	MEF2 CHIMERA
6bz1_C	6e-17	1	57	1	57	MEF2 CHIMERA
6bz1_D	6e-17	1	57	1	57	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	912597

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035601	1e-86	AL035601.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6G17 (ESSA project).
GenBank	AL161591	1e-86	AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87.
GenBank	CP002687	1e-86	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874518.1	4e-37	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	3e-21	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	D7MAM5	4e-68	D7MAM5_ARALL; Uncharacterized protein
STRING	scaffold_700339.1	6e-69	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-23	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	912597
Entrez Gene	9305059

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]