PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912822
Common NameARALYDRAFT_912822
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 267aa    MW: 29580.8 Da    PI: 5.1839
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912822genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-2097157257
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               r+R+t+t+ ql++Le+ F + + +ps+++++e++++l    ++ e++V++WFqNrRa+ k+
    912822  97 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITEELsqhgEIAEQNVYNWFQNRRARSKR 157
               89*****************99**************************************97 PP
2Wus_type_Homeobox102.53e-3396159265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq
             912822  96 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITEELSQHGEIAEQNVYNWFQNRRARSKRKQ 159
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1792160IPR009057Homeodomain-like
PROSITE profilePS5007114.91693158IPR001356Homeobox domain
SuperFamilySSF466891.45E-1793159IPR009057Homeodomain-like
SMARTSM003891.1E-1495162IPR001356Homeobox domain
PfamPF000461.7E-1897157IPR001356Homeobox domain
CDDcd000861.48E-1297159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMEWDNQQQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL  60
VEMHKTLTAQ QDLAGGRLGG LYADPMMSSI GHKMTARQRW TPTPVQLQIL ERIFDQGTGT  120
PSKQKIKEIT EELSQHGEIA EQNVYNWFQN RRARSKRKQQ GGGSSGNNNG ESEVETEVEA  180
LNEKRVRPES LLSLPDGNNN NNVLGSTTTT TTPRPEDLCF QSPEMSSDLH LLGVLANPRD  240
EHLVGKMGLS ESYNLYDHVE DYGMSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap912822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482680.0AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBankAY2514040.0AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBankBT0005380.0BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867068.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-164WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLD7MCZ40.0D7MCZ4_ARALL; Homeobox-leucine zipper protein
STRINGscaffold_700564.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-147WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]