PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

913297

Common Name

ARALYDRAFT_913297

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 103aa MW: 11657.3 Da PI: 6.5074

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
913297	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.2	1.2e-12	33	90	32	95
--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 32 esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 kt++l+ s +Wevk+ + ++ r lt+GWkeFv a++ gD++vF+++g+ f +v+ 913297 33 DLKTVKLRAdASDTVWEVKI--EDGR-R--LTRGWKEFVTAQDFFIGDVIVFRHEGDLVF--HVT 90 4568888865899*****..4444.3..9********************8876555..555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-17	9	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.89E-9	12	90	No hit	No description
SMART	SM01019	3.0E-9	14	95	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-8	23	86	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.1E-15	32	101	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.489	35	95	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MADPVLKSPT NPHFLQPLLP GFHSHLHLQG RNDLKTVKLR ADASDTVWEV KIEDGRRLTR 60 GWKEFVTAQD FFIGDVIVFR HEGDLVFHVT ALGPSFCEIE YT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	913297

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450654.1	2e-49	PREDICTED: B3 domain-containing protein REM17-like isoform X2
Refseq	XP_018450659.1	2e-49	PREDICTED: B3 domain-containing protein REM17-like isoform X2
Swissprot	Q8H2D0	5e-46	REM7_ARATH; B3 domain-containing protein REM7
TrEMBL	D7MB38	8e-70	D7MB38_ARALL; Uncharacterized protein
STRING	scaffold_701039.1	1e-70	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31660.1	2e-48	B3 family protein

Link Out ? help Back to Top
Phytozome	913297
Entrez Gene	9303356

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]