PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913363
Common NameARALYDRAFT_913363
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 188aa    MW: 20888.7 Da    PI: 5.7386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913363genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-192676256
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
            +y+GVr ++ +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++aa  +++ge
  913363 26 CYRGVRKRS-WGKWVSEIRVPK----TgRRIWLGSYDAPEKAARAYDAALFCIRGE 76
            8*****888.**********95....35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-122676IPR001471AP2/ERF domain
PROSITE profilePS5103221.9972683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-282684IPR001471AP2/ERF domain
SMARTSM003803.8E-362689IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202684IPR016177DNA-binding domain
PRINTSPR003672.2E-92738IPR001471AP2/ERF domain
CDDcd000183.33E-332785No hitNo description
PRINTSPR003672.2E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPPSPPKSPF MSSSLKEAHE DSRFKCYRGV RKRSWGKWVS EIRVPKTGRR IWLGSYDAPE  60
KAARAYDAAL FCIRGEKGVY NFPTDKKPQL PEGSVRPLSK LDIQTIATNY ASSVVHVPPH  120
ATTLPVTAQV PSEVPTSPDV SASTEITEIV DEYYLPTDAS AESIFSVEDL QLDNFLMMDI  180
DWINNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1627851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap913363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221980.0AL022198.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project).
GenBankAL1615780.0AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankBT0117740.0BT011774.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankBT0123990.0BT012399.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869347.11e-137ethylene-responsive transcription factor ERF015
SwissprotQ6NLD51e-129ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLD7MBJ31e-136D7MBJ3_ARALL; Uncharacterized protein
STRINGscaffold_701105.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-121ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]