PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913493
Common NameARALYDRAFT_913493
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-PHD
Protein Properties Length: 782aa    MW: 88896.8 Da    PI: 4.6884
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913493genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.4e-10468512953
               HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               k+ +e L ++F+++  p+++ r +L+k+l+L+ ++V  WF+N R+
    913493 468 KYAVEKLRQVFAETELPTKAVRDRLSKELSLDPEKVNKWFKNTRY 512
               67899**************************************97 PP
2PHD46.58.1e-16192247151
             SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
     PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
             +C+vC++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  913493 192 FCAVCNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdlGWFCKFCDCK 247
             7******55455********56*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.29E-15184249IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-13188247IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.154190247IPR019787Zinc finger, PHD-finger
CDDcd155041.82E-31192244No hitNo description
SMARTSM002491.8E-11192245IPR001965Zinc finger, PHD-type
PfamPF006285.5E-13192247IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590193244IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.2E-12445511IPR009057Homeodomain-like
SuperFamilySSF466891.54E-10452513IPR009057Homeodomain-like
PROSITE profilePS5007112.714457517IPR001356Homeobox domain
SMARTSM003891.5E-11459521IPR001356Homeobox domain
CDDcd000869.65E-9460512No hitNo description
PfamPF000465.1E-8468512IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MEESETKGRI NQETEKACVS VERIESTLLS SFVKKGKEVP NKRNFKPNKR KTEEDICSKS  60
RNKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD DSLRLQRRTR YLLIKMKMQQ  120
NLIDAYATEG WKGQSREKIR PDKELERARK QILNCKLGLR DAIRQLDLLS SVGSMEEKVI  180
APDGSIHHDH IFCAVCNSRE AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDLGWF  240
CKFCDCKMEI IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATLNNEA DWPSDDSKDD  300
DYDPEMRETG GGNSSNVSGD GSGDNDGGGD NDGESISTSL SLSSDGVALS TGSWEGHRLS  360
NMLEQCETSN EETVCGPRQR RTVDYTKLYY EMFGKDAVLQ EQGSEDEDWG PNDRRKRKRE  420
SDAGSTLVTM CESSKKDQDV VETLEQSERD SVSVENKGGR RPMFRLPKYA VEKLRQVFAE  480
TELPTKAVRD RLSKELSLDP EKVNKWFKNT RYMALRNRKT GSVKQPGDSK TVSGGESGPE  540
AVMENNTETN EVQDTLDMTV PPGFNDSATN QKILSPCTNN QEEIQQANVS FPSPTDESQH  600
YLEQNDSSFA LVPHEELSSE MSLKTAVEEK ETESKMTEEP HEELSSEMIL KTAVEEKETE  660
SKMMEVPQEE LRSETSLKTA VEEKETERKM TEESHEELSN EISLKTAVEE KETERKMTEE  720
EEFEAVMEML CRTENKLLDV TQRLERFKTP KGRKKLGKSS SSLNEEDSVV YVPIAEIKEK  780
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287TRKRKS
2413418RRKRKR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMap913493
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867379.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLD7MCG10.0D7MCG1_ARALL; Uncharacterized protein
STRINGscaffold_701235.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]