PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

9138

Common Name

MICPUCDRAFT_9138

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 89aa MW: 10063.6 Da PI: 9.8295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
9138	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	9	32	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ Cgk+F + +L +H ++ H 9138 9 CEhpGCGKVFAWSQDLAKHVKKiH 32 77779****************999 PP
2	zf-C2H2	15.1	6.5e-05	39	63	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C Cgk F k +L+ H rtH 9138 39 FHCAheGCGKAFHEKKLLTAHTRTH 63 678889******************9 PP
3	zf-C2H2	11.8	0.00076	69	89	1	19
EEET..TTTEEESSHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrH 19 + Cp C+k F+ + L H 9138 69 FACPhpGCDKAFRARNALAYH 89 789999**********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.217	7	37	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0024	7	32	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-9	8	33	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.38E-6	8	50	No hit	No description
PROSITE pattern	PS00028	0	9	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	39	63	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-10	39	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	14.835	39	68	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.92E-11	40	89	No hit	No description
PROSITE pattern	PS00028	0	41	63	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.9E-13	63	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	150	69	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.037	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
NGPRPKVMCE HPGCGKVFAW SQDLAKHVKK IHNREAPKFH CAHEGCGKAF HEKKLLTAHT 60 RTHTDERPFA CPHPGCDKAF RARNALAYH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ubd_C	8e-14	2	89	31	113	PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061423.1	2e-60	predicted protein, partial
TrEMBL	C1N0P4	4e-59	C1N0P4_MICPC; Predicted protein (Fragment)
STRING	XP_003061423.1	6e-60	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10650	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	4e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	9138
Entrez Gene	9686863

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]