PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914061
Common NameARALYDRAFT_914061
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 364aa    MW: 40184.3 Da    PI: 6.5684
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.72.1e-34135235198
  DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWgs 98 
             k+fqrl+se Dei+lLqG+idf++++g +p++didaf+ +vkk i+f+++k+q+v+K++rLKkKf++ vkk     ks++e++f+k+ +qk fels+kiWgs
  914061 135 KMFQRLFSEADEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFNATKNQIVTKLQRLKKKFNNTVKKslkkGKSEDEIEFAKDIEQKGFELSRKIWGS 235
             58*************************.9***************************************99988888999*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-27137234IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAPKKAEEVV DNPPTSSEEE ESGSSGEESE SSAEVSKKDE SSKKPESDSE GEYESESESD  60
SEPAKTMELM PLVTKPIPDK SGSAATVPES STAKRPLKEH ASEAIKKHKT SETEHVKKPT  120
TNDEVKKISG DDAKKMFQRL FSEADEIALL QGIIDFTSTK GDPYEDIDAF CIYVKKLIDF  180
NATKNQIVTK LQRLKKKFNN TVKKSLKKGK SEDEIEFAKD IEQKGFELSR KIWGSSGVLA  240
SKSSRKKVGG TPAPKEMKLV AHSSPKKQQE EAKKPEKIET KVVNTSLSIG REIASFFNAE  300
NKSSCGLDES TITAVWAKVA DGAEKREVEE KWKKLKGKEF ELCLQRSGLV NETAKMIFKA  360
YES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap914061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936980.0AB493698.1 Arabidopsis thaliana At4g25210 mRNA for hypothetical protein, partial cds, clone: RAAt4g25210.
GenBankAF3250950.0AF325095.1 Arabidopsis thaliana putative protein (F24A6.50) mRNA, complete cds.
GenBankAL0353960.0AL035396.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6 (ESSAII project).
GenBankAL1615620.0AL161562.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62.
GenBankAL1615630.0AL161563.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869685.10.0GLABROUS1 enhancer-binding protein-like isoform X1
SwissprotQ9SB420.0STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLD7MG290.0D7MG29_ARALL; Uncharacterized protein
STRINGscaffold_701803.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-180DNA-binding storekeeper protein-related transcriptional regulator