PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

914342

Common Name

ARALYDRAFT_914342

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 194aa MW: 21527.3 Da PI: 5.867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
914342	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8.1e-31	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+l+++Ca++C+ ap+fp+++ +f vh++FGa nv ++l++l ++e+r +a+++l y Aear rdP++G++g+il++++ l++++++++++ +e 914342 5 RCAVCKILKETCAPGCISAPHFPSDD-TRFDDVHQVFGAVNVRNILNNLeSPEQRAIAANCLRYAAEARRRDPISGCHGMILHYKNILNNVEQDIKSAMNE 104 6*********************99.89****************77888**************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.433	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-29	5	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASKRCAVCK ILKETCAPGC ISAPHFPSDD TRFDDVHQVF GAVNVRNILN NLESPEQRAI 60 AANCLRYAAE ARRRDPISGC HGMILHYKNI LNNVEQDIKS AMNELETYVG HDQVPKFYDL 120 PMPDDFLITP GSSDSFIEKI KSLNDVQKNQ LMQLQTAADV QMIMSNIFWK REDQKMDDGH 180 GHGADGASTS ASQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	914342

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869811.1	1e-145	LOB domain-containing protein 32
Swissprot	O49651	1e-103	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	D7ME15	1e-144	D7ME15_ARALL; Uncharacterized protein
STRING	scaffold_702084.1	1e-145	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	2e-98	LOB domain-containing protein 32

Link Out ? help Back to Top
Phytozome	914342
Entrez Gene	9305882