PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914517
Common NameARALYDRAFT_914517
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 737aa    MW: 82436.9 Da    PI: 8.4226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914517genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-11334410679
             ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS
      B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 
             + sd++  gr+vlpkk+ae++  ++++++++ lt++d+ g++W+++++++ ++++  yvl+ G     ++ +L++gD+
  914517 334 SASDTGIVGRVVLPKKCAEAFlpQLSHTQGVPLTVQDPMGKEWTFQFRFWPSRNSriYVLE-GVTPCIQSLQLQAGDT 410
             668888889**************9999**********************777777768888.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-11330410IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-6331431IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-17332445IPR015300DNA-binding pseudobarrel domain
CDDcd100178.82E-14333443No hitNo description
PfamPF023621.7E-8334410IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MSSSSFSARF CFNHECFEFK LDHCRPGWRL RSGDFVDLCD RCASAYEQGQ FCDVFHQRAS  60
GWRCCESCGK HFVQQIHCGC IVSASAFTLL DAGGIECLAC ARKKVALGSN FSPSPSFLFQ  120
SPISEKFNDL SINWSSSTRS NQISYQPPSY LGPSALQFDS RNRGGNNEFS QPTSKDRATA  180
CPMGKKRGMN DMIGKLMSEN SKHYKVSPFP NVNVYHPLIS IKEGPCGTQL AFPVPITTPI  240
EKTGHSRLDG SNLWHTPNSS PLSRLHNDLN GGSDSPFESK SRNVRTHLDT PGKYQVVPRY  300
WPKVSYKNQV LQNQSKEYPS SLIDTTLEYN FMLSASDTGI VGRVVLPKKC AEAFLPQLSH  360
TQGVPLTVQD PMGKEWTFQF RFWPSRNSRI YVLEGVTPCI QSLQLQAGDT ELMPGKWELI  420
SIFLLVIFSR LDPERKLILG FRKASVTRSS DQAETADMHS PSKVKKSAYI TKESPGVECS  480
SGKKKSSMMI TRSKRQKVEK GDHNLLKLTW EEAQGFLLPP PNLTPSRVVI EDYEFEEYED  540
APIIGKPTDA AGSTCTEVEG LLISPTTTKH PRHRNGCTCI VCIQSPSGIG PKHDRRCSCA  600
VCETKKRRRR SLLLRREKMQ MEKEDNAHKE LEQLNSDNGL HQSANNSENH ERHDSPERHA  660
SPLKSQLDLN FKPEKDEESL PGSNKTTENK TFHHNDTVNS SFKSPSSSSA HSQNNKEDEG  720
KLRKNTEVAD TTTSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A2e-3933344513110B3 domain-containing transcription repressor VAL1
6fas_B2e-3933344513110B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1604609KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap914517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873328.10.0B3 domain-containing transcription factor VAL3 isoform X3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLD7MES50.0D7MES5_ARALL; Uncharacterized protein
STRINGscaffold_702259.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3