PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914578
Common NameARALYDRAFT_914578
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 224aa    MW: 25391.2 Da    PI: 8.2758
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914578genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.7e-382480561
  zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
             + cprCds+ntkfCyynnys sqPryfCk+CrryWt+GGalrn+P+Gg++rk k+ 
  914578 24 PRVCPRCDSDNTKFCYYNNYSESQPRYFCKNCRRYWTHGGALRNIPIGGSCRKPKRP 80
            678**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-272579IPR003851Zinc finger, Dof-type
PfamPF027014.9E-322579IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5842579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDNLNVFANE DNQVDGVKPP PPPPRVCPRC DSDNTKFCYY NNYSESQPRY FCKNCRRYWT  60
HGGALRNIPI GGSCRKPKRP KVDQSLVSQM VSVENRRVDH QPFKQIYENN EFVRSFGASS  120
SSIAAVVGNH FGYLSELHGV TNLLPVRSFR MDCLDFGDDS FQQDYHDVGS NDLIGNPLIN  180
QSIGGYVDNL KSYRINQVDQ HKWNQSFNNT MNMNHKANAS GSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap914578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869911.11e-167dof zinc finger protein DOF4.4
SwissprotQ9SUA91e-118DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLD7MFF81e-166D7MFF8_ARALL; Dof-type zinc finger domain-containing protein
STRINGscaffold_702320.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-114Dof-type zinc finger domain-containing protein