PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914579
Common NameARALYDRAFT_914579
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 195aa    MW: 21875.1 Da    PI: 6.2264
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914579genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.85.4e-342175559
  zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59
             + cprC s++tkfCy+nny +sqPry Ck CrryWt+GGalrn+P+Gg++rk+k
  914579 21 PRVCPRCYSDQTKFCYFNNYKTSQPRYKCKDCRRYWTHGGALRNIPIGGSCRKSK 75
            578**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088427.0182276IPR003851Zinc finger, Dof-type
PfamPF027018.5E-302275IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-172975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048359Biological Processmucilage metabolic process involved in seed coat development
GO:0048825Biological Processcotyledon development
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDTLNVFANE DNQVNVVKPP PRVCPRCYSD QTKFCYFNNY KTSQPRYKCK DCRRYWTHGG  60
ALRNIPIGGS CRKSKLPKID QSSVSQMASV EIQPSNHQPL SENQENISVN ASSSSAAIGN  120
HFGYFSELHG VANLSPTRSF LTMDHLDFGD ESFQQDLYDV GSNDLIGNPW INQSIGGNID  180
NHNDQPKLQY EYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00445DAPTransfer from AT4G21030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap914579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872034.11e-145dof zinc finger protein DOF4.2
SwissprotQ9SUB14e-92DOF42_ARATH; Dof zinc finger protein DOF4.2
TrEMBLD7MFF91e-144D7MFF9_ARALL; Uncharacterized protein
STRINGscaffold_702321.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21030.14e-80Dof-type zinc finger domain-containing protein