PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914699
Common NameARALYDRAFT_914699
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 131aa    MW: 15264.8 Da    PI: 10.8685
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914699genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind591.2e-18121062103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F k++ye+++d++l+++isws++++sf++++++e+ ++++   F    f+ F   L+ +gFk++k+ +++        eF + +F +g+ ell+k++
        914699  12 FYKRVYEVVDDPSLDSIISWSKSNKSFIIWNHQELRRRMIFANFHGPFFSNFFSMLKNFGFKRIKNGSGQ-------LEFGNANFVRGQPELLKKMQ 101
                   899*****************************************************************99.......******************99 PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                    k+++
        914699 102 IKANH 106
                   98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-198101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-178103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-211098IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-1712101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-56375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVDDFPKGLF RFYKRVYEVV DDPSLDSIIS WSKSNKSFII WNHQELRRRM IFANFHGPFF  60
SNFFSMLKNF GFKRIKNGSG QLEFGNANFV RGQPELLKKM QIKANHKRSM KIIAKEKAEE  120
AADGLKLLRV *
Cis-element ? help Back to Top
SourceLink
PlantRegMap914699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867928.15e-91heat stress transcription factor A-4a
TrEMBLD7MG971e-89D7MG97_ARALL; Uncharacterized protein
STRINGscaffold_702441.12e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-29HSF family protein