PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914837
Common NameARALYDRAFT_914837
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 305aa    MW: 34828.3 Da    PI: 4.8838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18109159255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  914837 109 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 159
             8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-29108168IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-20109169IPR016177DNA-binding domain
SMARTSM003801.6E-35109174IPR001471AP2/ERF domain
PfamPF008474.9E-12109159IPR001471AP2/ERF domain
CDDcd000182.78E-29109168No hitNo description
PROSITE profilePS5103222.721109168IPR001471AP2/ERF domain
PRINTSPR003677.0E-11110121IPR001471AP2/ERF domain
PRINTSPR003677.0E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAFGNIQEPD GEILENVWAN FIRKPQTDKR SIHVPEVSRT WGALPTLDDI PEDSKEMLPS  60
LDMSMEDLEW TEILDVIASF PSETNHDPLT NPTTDSCFLP SRVCCKTRKY RGVRRRPWGK  120
FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKAHTNFQLE TVIKAMEMDC  180
NPNYYPINSS NTSQPLRSGH KIGLRTRKEA IRAYDKVVDE LVENHCALSC CSTKKYSETC  240
GLLGSEETWL GSRKRRRSDK DYMFEEVEMQ KMVTEQEETL CDVFGLFEFE DLGSDYLDTL  300
LSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-25106169264ATERF1
3gcc_A9e-25106169264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256RKRRR
2252257RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap914837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0217100.0AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project).
GenBankAL1615480.0AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867990.10.0ethylene-responsive transcription factor ERF091
SwissprotO495150.0ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLD7MCS00.0D7MCS0_ARALL; Uncharacterized protein
STRINGscaffold_702579.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-179ERF family protein