PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

914964

Common Name

ARALYDRAFT_914964

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 63aa MW: 7054.17 Da PI: 9.326

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
914964	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.9	7.5e-10	3	49	53	99
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 e+++ + s +eA++r+ P+yG+vg+i+ lq+q++++k+e l+k+ 914964 3 EQQQWVISSSFEAQCRIVGPIYGCVGIISLLQSQIQTKKNENLLAKT 49 4666777889*****************************99887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.8E-7	3	45	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MKEQQQWVIS SSFEAQCRIV GPIYGCVGII SLLQSQIQTK KNENLLAKTN LVRTTLPNSY 60 FH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	914964

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D7MBX8	4e-38	D7MBX8_ARALL; Uncharacterized protein
STRING	scaffold_702706.1	6e-39	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	4e-12	LOB domain-containing protein 23

Link Out ? help Back to Top
Phytozome	914964
Entrez Gene	9304130