PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 915131
Common NameARALYDRAFT_915131
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 121aa    MW: 13848.8 Da    PI: 5.1897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
915131genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind62.98e-20141042100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                    lkk+ye++++++++++isw ++++sf+++d e f+k +Lp++    n+  +   L++YgF kv++e+k        weF+++ F +g+ elleki 
        915131  14 LLKKTYEVVDHPSTNSIISWGHDNKSFIIWDLEGFEKFLLPNILSPGNLGVYASYLKLYGFLKVESEQK--------WEFADDDFVRGHPELLEKIT 102
                   589**************************************************************9984........*******************8 PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                    +
        915131 103 DR 104
                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-2010104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-2013102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-61437IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-2114102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-1815103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-65264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-66577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDPSSSIARK ALDLLKKTYE VVDHPSTNSI ISWGHDNKSF IIWDLEGFEK FLLPNILSPG  60
NLGVYASYLK LYGFLKVESE QKWEFADDDF VRGHPELLEK ITDRYKIYCQ AFCAREGLII  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap915131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870167.22e-85heat stress transcription factor A-4a
TrEMBLD7M9X31e-83D7M9X3_ARALL; Uncharacterized protein
STRINGscaffold_702873.12e-84(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-22heat shock factor 1