PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 915820
Common NameARALYDRAFT_915820
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 114aa    MW: 12579.4 Da    PI: 10.3927
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
915820genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.21.3e-1148762551
  G2-like 25 ekAtPktilelmkv..kgLtlehvkSHLQ 51
              +AtPk+i++lmkv  +gLt+++vkSHLQ
   915820 48 AVATPKQIRDLMKVkvDGLTNDEVKSHLQ 76
             579*********85227************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF558741.05E-10249IPR003594Histidine kinase-like ATPase, C-terminal domain
Gene3DG3DSA:3.30.565.107.9E-16248IPR003594Histidine kinase-like ATPase, C-terminal domain
TIGRFAMsTIGR015571.0E-84878IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-84976IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLNIID SGIGMTKAVA TPKQIRDLMK  60
VKVDGLTNDE VKSHLQIAHK KTSYSGSNKR WRKSTTTAIH GGGRNCAVAR YNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x9l_A2e-2224877123Heat shock protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap915820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114764e-52AB011476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7.
GenBankCP0026884e-52CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankY118284e-52Y11828.1 A.thaliana hsp81.4 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885980.11e-44transcription factor HHO3
TrEMBLD7MI753e-78D7MI75_ARALL; Uncharacterized protein
STRINGscaffold_703562.14e-79(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-10G2-like family protein