PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 915859
Common NameARALYDRAFT_915859
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 625aa    MW: 71180.3 Da    PI: 7.1841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
915859genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07364407346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+ Ed+ l++++++    +W  Ia  +g++Rt+ qc  r+q 
           915859 364 PWTAAEDKNLLRVIEKKSLTDWLGIAVSLGTNRTPFQCLARYQR 407
                      8*****************************************96 PP
2Myb_DNA-binding44.24.4e-14415459146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+ WT+eEd++l  av+++G ++W ++a+ +  gR +kqc +rw +
           915859 415 RKEWTAEEDDQLRAAVELFGDKDWQSVANVLK-GRFGKQCSNRWKN 459
                      789****************************9.***********98 PP
3Myb_DNA-binding52.98.8e-17466510146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +grW+ eEd++l+ av+++G ++W +I++ ++ gRt+ qc++rw++
           915859 466 KGRWSSEEDKRLKVAVTLFGAKNWPKISSFVP-GRTASQCRERWLD 510
                      79******************************.***********85 PP
4Myb_DNA-binding42.12.1e-13519562247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+eEd++l +a++ +G   W ++a+++   Rt+ qc  rw ++
           915859 519 GKWTEEEDQKLREAIAVHGYS-WVKVASHVS-LRTDSQCSRRWKTL 562
                      89*****************99.*********.9**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071720267358IPR001005SANT/Myb domain
PROSITE profilePS500904.867268356IPR017877Myb-like domain
SuperFamilySSF466893.83E-12340406IPR009057Homeodomain-like
PROSITE profilePS500908.269357409IPR017877Myb-like domain
SMARTSM007172.1E-7361411IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12364419IPR009057Homeodomain-like
PfamPF002492.8E-6364407IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-19394461IPR009057Homeodomain-like
PROSITE profilePS5129421.021410465IPR017930Myb domain
SMARTSM007173.8E-11414463IPR001005SANT/Myb domain
PfamPF002493.9E-13415459IPR001005SANT/Myb domain
CDDcd001679.02E-11417461No hitNo description
Gene3DG3DSA:1.10.10.601.0E-16420463IPR009057Homeodomain-like
SuperFamilySSF466898.28E-20441510IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-16465513IPR009057Homeodomain-like
SMARTSM007175.2E-14465514IPR001005SANT/Myb domain
PROSITE profilePS5129413.928466512IPR017930Myb domain
PfamPF002491.3E-14466510IPR001005SANT/Myb domain
CDDcd001672.36E-11468508No hitNo description
SuperFamilySSF466892.42E-21492565IPR009057Homeodomain-like
PROSITE profilePS5129419.467513567IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-15514566IPR009057Homeodomain-like
SMARTSM007171.2E-12517565IPR001005SANT/Myb domain
PfamPF002491.1E-12519562IPR001005SANT/Myb domain
CDDcd001672.21E-10520562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MNRNSLYESD DDEEEDDFGD DLEELRRACT VSVSHAGSDK FTAKTDSIEP DGGGGRGIAS  60
DFEMLRTNVS LPLIGLSDDE EDETLLAIQR RFSAYKSFDP EGNFMNDSPR KKRQVQDGHS  120
VEVHEKTSIE PPDHLKTCQL PLKPAAIASF PEAAQAFVDA IRKNRAYQQF LRRKLVEIEA  180
TIEQNVIHQK NVKIVKDFQG SCKRITKQAL SQRKDPRVRL ISTRKFEPCD GSEDNDEKIS  240
PSMLGPRENP CVANYRMALE KYPVLEERRK WSTEENKNLA KGLKQQVQKI LLSEAIEQSS  300
DWEGSTYDID TINESIGNLE ITPEMIRQFL RKINWDSLDI KDRSSAECEA RWMSSEDPLI  360
NHAPWTAAED KNLLRVIEKK SLTDWLGIAV SLGTNRTPFQ CLARYQRSLN PSILRKEWTA  420
EEDDQLRAAV ELFGDKDWQS VANVLKGRFG KQCSNRWKNS LCPTRKGRWS SEEDKRLKVA  480
VTLFGAKNWP KISSFVPGRT ASQCRERWLD SLESKKNCGK WTEEEDQKLR EAIAVHGYSW  540
VKVASHVSLR TDSQCSRRWK TLNPHLVQLL LEARKLRKEA TAGNFVDRES ERPAYIAGPI  600
LALPEISLAP ESDIAALEKK RKAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-273425619158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-273425619158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap915859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
GenBankAY0597730.0AY059773.1 Arabidopsis thaliana At3g18100 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868515.20.0LOW QUALITY PROTEIN: myb-like protein L
TrEMBLD7MIB10.0D7MIB1_ARALL; Uncharacterized protein
STRINGscaffold_703601.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1