PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916000
Common NameARALYDRAFT_916000
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 188aa    MW: 22167.8 Da    PI: 10.6945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916000genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-106082527
             --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
              C+ ++r G+Ck+GdrC+F Hg+
   916000 60 MCDQYSRLGHCKRGDRCPFLHGK 82
             5********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.32E-65682IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-45782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-76082IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.076083IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-76182IPR000571Zinc finger, CCCH-type
SuperFamilySSF549285.19E-7102158IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3308.1E-6111158IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005904.55E-5120157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKEELERKRR KMGDLQPFAS RMGDFNKNWV RFENNRKLEM LEGKRRKMGD MQRLACQRLM  60
CDQYSRLGHC KRGDRCPFLH GKRMKPLYRN ISDNPELVAF MMKNGNMPAC PPEDPTVKML  120
YVKRLSRTTL VEEDLRDCLS AYGDIESIRM VQESGNKKIR SDSRLFERQQ RNAWKISKLG  180
LRSRVTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap916000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874942.11e-111zinc finger CCCH domain-containing protein 40
TrEMBLD7MIP31e-135D7MIP3_ARALL; Uncharacterized protein
STRINGscaffold_703742.11e-136(Arabidopsis lyrata)