PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916025

Common Name

ARALYDRAFT_916025

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 250aa MW: 28590.9 Da PI: 9.9718

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916025	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	77.9	1.7e-24	59	145	7	97
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 wsee ei +LqG+ dfka t k+p+dd+++ yef+++ is++v+ ++veK+++LKkK ++vk + keps s++h + + el + iWg 916025 59 WSEEEEIRVLQGMTDFKAITRKNPFDDMNGAYEFLQEYISVDVN--DFVEKMKSLKKKLMGQVKI--NAKEPSSSEPHGHTSSELLRLIWG 145 **************************************9995..8**************..99*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-17	58	145	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGKVNTNRSK KMKEVCGGSD EAKPAGKRRK NEVTSMDKDV SAKRSKKDAK KASSLKLEWS 60 EEEEIRVLQG MTDFKAITRK NPFDDMNGAY EFLQEYISVD VNDFVEKMKS LKKKLMGQVK 120 INAKEPSSSE PHGHTSSELL RLIWGCDVES AVEKPRKSKR IIKLKEEKQV MVHEGGKWFE 180 NGLIVRKIAS FGVGEDSLKR KWGSVPMEEK DMIDQKWRVL RTKELEYMLQ RDKFLNDVFT 240 MMDEAASSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916025

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870618.1	0.0	probable transcription factor At4g00232
Swissprot	Q3EAE7	9e-52	STKLL_ARATH; Probable transcription factor At4g00232
TrEMBL	D7MIR8	0.0	D7MIR8_ARALL; Uncharacterized protein
STRING	scaffold_703767.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00232.1	3e-40	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	916025
Entrez Gene	9306689