PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916104

Common Name

ARALYDRAFT_916104

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 255aa MW: 29279.2 Da PI: 9.6482

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916104	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87.3	1.9e-27	59	152	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +r w+++ e+++L G+ ++++++++s+++d++a+y+ +++s+ +++sk+qlv+K+ +LK +f +++++++ gk sf+++hd+++f+ls iWg 916104 59 KRNWTKTEELLILEGIENYEKENKSSYTSDWNAIYDRIRDSMGSDFSKKQLVDKVYKLKLRFGENQARSNAGKRLSFTSAHDKQVFKLSTVIWG 152 89*******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.4E-25	59	152	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKRQLQRSDS SDYSNSDCFE IRKHEDDDIS VSEMMLRKRK KLKTATTLLE PSSSSGAWKR 60 NWTKTEELLI LEGIENYEKE NKSSYTSDWN AIYDRIRDSM GSDFSKKQLV DKVYKLKLRF 120 GENQARSNAG KRLSFTSAHD KQVFKLSTVI WGNNKTKYEI MDQTKERVTN AIDDGEKDKC 180 EDLNVLQDAL EVAAAFPSLG IYQQKSLLRN LKNLGATQRK KLTDEWKALL GEDMQLGIKK 240 QSFYAKLVKE GFSA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	41	LRKRKKL
2	36	40	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916104

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002868615.1	0.0	GLABROUS1 enhancer-binding protein-like 3 isoform X2
TrEMBL	D7MIY8	0.0	D7MIY8_ARALL; Uncharacterized protein
STRING	scaffold_703846.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	3e-31	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	916104
Entrez Gene	9304687