PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916273

Common Name

ARALYDRAFT_916273

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 182aa MW: 21275.4 Da PI: 10.578

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916273	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	9	53	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + WT+ Ed++l ++v+ +G+++Wk Ia++m+ +t+k+c+ rw + 916273 9 KYWTPSEDLKLTRLVATYGPRRWKHIAEKMQ-VKTGKSCRFRWINQ 53 68***************************.89*******985 PP
2	Myb_DNA-binding	44.4	3.8e-14	61	105	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ eE+ +++ a ++lG++ W++Ia+ + +Rt++ +k++w++++ 916273 61 TAFNDEEEAKILSAQRELGNK-WSKIAKLLH-RRTANAVKNHWHQLM 105 57899**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.122	3	54	IPR017930	Myb domain
SMART	SM00717	6.8E-15	7	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.94E-26	8	106	IPR009057	Homeodomain-like
Pfam	PF13921	1.2E-15	11	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-25	11	61	IPR009057	Homeodomain-like
CDD	cd00167	3.17E-11	11	52	No hit	No description
PROSITE profile	PS51294	23.108	55	109	IPR017930	Myb domain
SMART	SM00717	2.1E-12	59	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-19	62	109	IPR009057	Homeodomain-like
CDD	cd00167	1.54E-7	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MHHERYKKKY WTPSEDLKLT RLVATYGPRR WKHIAEKMQV KTGKSCRFRW INQLDPRINK 60 TAFNDEEEAK ILSAQRELGN KWSKIAKLLH RRTANAVKNH WHQLMRKTLM KQAKDETNNL 120 KAKYKEAMEY SARHHQLTHH VSISQPSSSS LPSEAKDTTE ASYFKTNVPL KYIDFLGVGD 180 A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-28	11	109	7	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	5e-28	11	109	61	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-28	11	109	61	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-28	11	109	7	105	C-Myb DNA-Binding Domain
1msf_C	1e-28	11	109	7	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916273

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874175.1	9e-50	transcription factor MYB105
Swissprot	Q9SEZ4	8e-38	MY105_ARATH; Transcription factor MYB105
TrEMBL	D7MJD8	1e-133	D7MJD8_ARALL; Uncharacterized protein
STRING	scaffold_704015.1	1e-134	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.2	3e-45	myb domain protein 110

Link Out ? help Back to Top
Phytozome	916273
Entrez Gene	9306803

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]