PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916274
Common NameARALYDRAFT_916274
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 148aa    MW: 17830.6 Da    PI: 10.8449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916274genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-12944238
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     + WT+ Ed++l ++v+ +G ++W++ a++m+ gRt+k
           916274  9 KFWTPSEDLKLTELVATYGARRWNRLAEKMQ-GRTGK 44
                     67*****************************.***97 PP
2Myb_DNA-binding38.72.3e-1290132246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T eEd +++ a ++lG+  W++Ia+ +  +Rt+  +++ w+ 
           916274  90 TAFTDEEDAKILSAQRELGNQ-WTKIAKLLH-RRTDIAVRNQWRH 132
                      689****************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.222159IPR017930Myb domain
SuperFamilySSF466893.24E-10653IPR009057Homeodomain-like
SMARTSM007172.4E-7757IPR001005SANT/Myb domain
CDDcd001671.78E-81155No hitNo description
Gene3DG3DSA:1.10.10.603.1E-241190IPR009057Homeodomain-like
PfamPF002492.4E-101144IPR001005SANT/Myb domain
SuperFamilySSF466891.37E-1972139IPR009057Homeodomain-like
PROSITE profilePS5129420.11584138IPR017930Myb domain
SMARTSM007172.2E-1188136IPR001005SANT/Myb domain
PfamPF002491.2E-1089131IPR001005SANT/Myb domain
CDDcd001676.64E-791133No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1791137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MHHERQEKKF WTPSEDLKLT ELVATYGARR WNRLAEKMQG RTGKRMCFHF CYSLFVFFRK  60
LKSYSSYYVL EGKGCRIRWL NKLDPRINKT AFTDEEDAKI LSAQRELGNQ WTKIAKLLHR  120
RTDIAVRNQW RHLNTKKVEE ANKRRNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2181397109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap916274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874175.11e-58transcription factor MYB105
TrEMBLD7MJD91e-106D7MJD9_ARALL; Uncharacterized protein
STRINGscaffold_704016.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.18e-33myb domain protein 110