PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916405

Common Name

ARALYDRAFT_916405

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 135aa MW: 14347.9 Da PI: 4.9271

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916405	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	47.5	4.1e-15	1	32	29	59
ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRrevee 59 mps++++ +++++lkCaACgCHRnFHRre+++ 916405 1 MPSPSSTpSDPTSLKCAACGCHRNFHRREPDD 32 677778889********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	10.742	1	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.1E-11	5	30	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	0.002	14	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MPSPSSTPSD PTSLKCAACG CHRNFHRREP DDSSSVPPPS LLPSSSTTAT IEYQPHHRHH 60 PPPLLAPPLP RSPSSSSPTV AEGDRKRTCE FVVGQGDGPQ GPALLEEPVW DLTRETIAAE 120 IDDLEAAEVR ELGV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916405

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	1e-89	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	1e-89	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	1e-89	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	1e-89	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	1e-89	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D7MJR2	2e-90	D7MJR2_ARALL; Expressed protein
STRING	scaffold_704147.1	4e-91	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	4e-09	homeobox protein 34

Link Out ? help Back to Top
Phytozome	916405
Entrez Gene	9304812