PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916437
Common NameARALYDRAFT_916437
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 163aa    MW: 18868.1 Da    PI: 6.5156
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916437genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-1271116550
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
             ++++rk++NRe+ArrsR RK+ + +eL   v  L +eN++L  +l+
  916437  71 RKQKRKISNRESARRSRMRKQRQADELWSQVMWLRNENHQLLRKLN 116
             689************************************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-1167131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-1069118No hitNo description
PROSITE profilePS5021710.43869132IPR004827Basic-leucine zipper domain
PfamPF001701.8E-1071117IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.05E-1171120No hitNo description
CDDcd147023.31E-1772120No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQPATNIFSL HGCPPSYLSH FPTSTPFCGQ NPNPFFSFES GVYTPQFMSL SSNNSTSEEG  60
EENLTEIFNE RKQKRKISNR ESARRSRMRK QRQADELWSQ VMWLRNENHQ LLRKLNCVLE  120
SQEKVIEENA QLKEETSELK HLISDMQLQN QSPFSGIRDD IV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00533DAPTransfer from AT5G38800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap916437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0090481e-179AB009048.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6.
GenBankCP0026881e-179CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868752.21e-115basic leucine zipper 43
SwissprotQ9FMC21e-101BZP43_ARATH; Basic leucine zipper 43
TrEMBLD7MJU51e-116D7MJU5_ARALL; BZIP transcription factor family protein
STRINGscaffold_704179.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-92basic leucine-zipper 43
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]