PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916469

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 162aa MW: 18468.1 Da PI: 6.2236

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916469	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.5e-17	15	101	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk l ++++ l +p f+++h +gk+ ++kt+ l++ s ++W vk+ ++ lt+GW++F+ +++L+ gD+vvF+++g++ f +v++ 916469 15 FFKPL--LEGFRTH-LNIPVAFFSKHvEGKNDQNKTVNLRSdASEKTWLVKM--DGLN----LTDGWEDFAFSHDLRIGDIVVFRHEGEMVF--HVTA 101 66666..6677777.9*********8888899**97888***..5555....*********************9998888..6655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-22	11	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.81E-20	11	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.069	12	105	IPR003340	B3 DNA binding domain
CDD	cd10017	1.09E-15	13	100	No hit	No description
SMART	SM01019	2.1E-21	15	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.0E-11	22	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MADQSLLHSP IKPHFFKPLL EGFRTHLNIP VAFFSKHVEG KNDQNKTVNL RSDASEKTWL 60 VKMDGLNLTD GWEDFAFSHD LRIGDIVVFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNIND 120 DDRNDQTNIG KLLLSEMYSA KAKPKQRSQS DSSSDHSCFE XX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916469

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002947	1e-136	BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875226.1	1e-100	B3 domain-containing protein REM17, partial
Swissprot	Q84WP3	7e-79	REM17_ARATH; B3 domain-containing protein REM17
TrEMBL	D7KQM9	6e-84	D7KQM9_ARALL; T24P13.6
TrEMBL	D7MVQ9	4e-89	D7MVQ9_ARALL; Predicted protein (Fragment)
STRING	scaffold_704211.1	1e-118	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	2e-78	B3 family protein

Link Out ? help Back to Top
Phytozome	916469
Entrez Gene	9329448

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]