PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916966

Common Name

ARALYDRAFT_916966

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 1065aa MW: 120764 Da PI: 8.5149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916966	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	27.6	6.5e-09	17	42	2	27
G2-like 2 prlrWtpeLHerFveaveqLGGsekA 27 r Wt eLH+rFv++v+ LGGse+ 916966 17 RRKIWTAELHDRFVDVVNALGGSERG 42 5788*******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-5	16	42	IPR009057	Homeodomain-like
Pfam	PF01582	1.5E-10	70	156	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	1.91E-7	143	265	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	6.1E-6	206	220	No hit	No description
SuperFamily	SSF46785	6.53E-7	242	345	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	1.47E-36	362	593	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.8E-26	411	626	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	6.1E-6	494	510	No hit	No description
Gene3D	G3DSA:3.80.10.10	8.3E-12	676	768	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.47E-36	678	780	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence Send to blast
MSESMEGSDP QLQVSERRKI WTAELHDRFV DVVNALGGSE RGSEPSLLLR YDLVTDTKTR 60 IRDLNTLNGV FILLFSKTYA SAESMDKLVT LMEYQKENGV LIIPIFFKVT PSEVQDPKGF 120 TKETFSQLDN SVQAGRVQKW REVIDELAHN DECKWIAGNR QVLVQCKVNG LYEMQKLSEY 180 ESSETFSLSL PGRYDSMLNS ELVRYASGIP LVLGVLGSFA TNQCKFSEKE QLQMLRQNPP 240 TEILEAFRRS FDGLNDNEKN MFLDLACFFR GENRNHVIQI LDGCGYFTDL GIYGLIDESL 300 IDPLENKIEM SNVFQDMGRF VVCEESKEPG KRSRLWDANE IANVLTSNSG TEAVEGIFLD 360 MSDLTCELSP TIFDRTYRLR LLKLHCAISE NRGTICLPRG LYSLPDELRL LHWESYPLRS 420 LPRENLEKLK KIILSHSRQL IKIPRLSKAL NLEHIDLEGC TSLVKVSSSI HHLDKLVFLN 480 LKDCSRLRTL PVMIHLESLE VLNLSGCSDL KEIQDFSPNL KELYLAGTAI RELPSSIEKL 540 TRLVTLDLDN CNQLQKLPQG MSNLKAMVTL KLSGCSNLKS LPNLDAIYLR GTQHLNTEIT 600 MEVPKSLVHH SSIHQSRLDH CETLDKLIPD LCLKNAAIQK SLAASVYRQI AGIRQENWQW 660 STIKLQPLSI FHFLASRLYA LVSLCLSNAC LVDLPKEICG LPSVNILDLG GNGFSKIPES 720 IKLLPKLHSL RLRHCKNLKS LPELPQSLVL LNVHGCVSMK SVPWSFERLQ CTFSNCFNLS 780 PEVIRRFLAK ALGIVKNMNR EKHQKLITVT AFSICAPASV GLKSSTDVLA SEGLKSSMQN 840 GSFVVIHLTS SLRKTFLGFA MSVVVSFRDN YYNAAGFSIR CTCIRKMKNG LSHRLERVFQ 900 FWAPKEASKI KKDHIFVFYD TIIPSYAREG NNVYNIFDEL VGFEFYPVNN QNEVLADSCE 960 VKNCGVYVVT DASVDTSLVK KRFSPTNRER IGKRPLASAM DPRGFSSYRE PLPRFKRGRY 1020 RRSVETAILK IRKRKREEGF YVSNQRCESE TFLISNLTLF LLKK*

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence Send to blast

MSESMEGSDP QLQVSERRKI WTAELHDRFV DVVNALGGSE RGSEPSLLLR YDLVTDTKTR  60
IRDLNTLNGV FILLFSKTYA SAESMDKLVT LMEYQKENGV LIIPIFFKVT PSEVQDPKGF  120
TKETFSQLDN SVQAGRVQKW REVIDELAHN DECKWIAGNR QVLVQCKVNG LYEMQKLSEY  180
ESSETFSLSL PGRYDSMLNS ELVRYASGIP LVLGVLGSFA TNQCKFSEKE QLQMLRQNPP  240
TEILEAFRRS FDGLNDNEKN MFLDLACFFR GENRNHVIQI LDGCGYFTDL GIYGLIDESL  300
IDPLENKIEM SNVFQDMGRF VVCEESKEPG KRSRLWDANE IANVLTSNSG TEAVEGIFLD  360
MSDLTCELSP TIFDRTYRLR LLKLHCAISE NRGTICLPRG LYSLPDELRL LHWESYPLRS  420
LPRENLEKLK KIILSHSRQL IKIPRLSKAL NLEHIDLEGC TSLVKVSSSI HHLDKLVFLN  480
LKDCSRLRTL PVMIHLESLE VLNLSGCSDL KEIQDFSPNL KELYLAGTAI RELPSSIEKL  540
TRLVTLDLDN CNQLQKLPQG MSNLKAMVTL KLSGCSNLKS LPNLDAIYLR GTQHLNTEIT  600
MEVPKSLVHH SSIHQSRLDH CETLDKLIPD LCLKNAAIQK SLAASVYRQI AGIRQENWQW  660
STIKLQPLSI FHFLASRLYA LVSLCLSNAC LVDLPKEICG LPSVNILDLG GNGFSKIPES  720
IKLLPKLHSL RLRHCKNLKS LPELPQSLVL LNVHGCVSMK SVPWSFERLQ CTFSNCFNLS  780
PEVIRRFLAK ALGIVKNMNR EKHQKLITVT AFSICAPASV GLKSSTDVLA SEGLKSSMQN  840
GSFVVIHLTS SLRKTFLGFA MSVVVSFRDN YYNAAGFSIR CTCIRKMKNG LSHRLERVFQ  900
FWAPKEASKI KKDHIFVFYD TIIPSYAREG NNVYNIFDEL VGFEFYPVNN QNEVLADSCE  960
VKNCGVYVVT DASVDTSLVK KRFSPTNRER IGKRPLASAM DPRGFSSYRE PLPRFKRGRY  1020
RRSVETAILK IRKRKREEGF YVSNQRCESE TFLISNLTLF LLKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916966

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020744	0.0	AB020744.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9E15.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886809.1	0.0	LOW QUALITY PROTEIN: disease resistance protein RRS1
TrEMBL	D7MUS6	0.0	D7MUS6_ARALL; Uncharacterized protein
STRING	scaffold_800366.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5462	9	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45260.1	1e-123	Disease resistance protein (TIR-NBS-LRR class)

Link Out ? help Back to Top
Phytozome	916966
Entrez Gene	9301332