PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917343
Common NameARALYDRAFT_917343
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 132aa    MW: 14819.1 Da    PI: 10.2028
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917343genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.42.4e-169891897
   NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
            + e+Pl r+kki+k d+++++i +ea  +++ + elf+  l+ +s + + e+kr+t++   + +av+r + + dfl+d  p
  917343  9 RPEFPLGRVKKIMKLDKEINKINSEALHVITYSTELFLHFLAEKSAIVTAEKKRKTVNLDHLRTAVKRHQpTSDFLLDSLP 89
            568***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.5E-201174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.48E-1811102IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-211289IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAEEETSTRP EFPLGRVKKI MKLDKEINKI NSEALHVITY STELFLHFLA EKSAIVTAEK  60
KRKTVNLDHL RTAVKRHQPT SDFLLDSLPL PAQPVKHTKS VSDKKAPPPP IGTRRIDDFF  120
SKGKEKTDDS A*
Cis-element ? help Back to Top
SourceLink
PlantRegMap917343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170701e-148AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12.
GenBankAB4937741e-148AB493774.1 Arabidopsis thaliana At5g43250 mRNA for hypothetical protein, partial cds, clone: RAAt5g43250.
GenBankCP0026881e-148CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863677.21e-90chromatin accessibility complex protein 1
TrEMBLD7MPA03e-89D7MPA0_ARALL; Uncharacterized protein
STRINGscaffold_800743.15e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-84nuclear factor Y, subunit C13