PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917368
Common NameARALYDRAFT_917368
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 192aa    MW: 20896.5 Da    PI: 9.0124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917368genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000767492119
             EEETTTTEEESSHHHHHHH CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrH 19
             ykC+ C k+Fs+   L  H
   917368 74 YKCGVCYKTFSSYQALGGH 92
             9**********98877555 PP
2zf-C2H211.90.0007116135120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++C+ CgksF +   L  H 
   917368 116 HVCSVCGKSFATGQALGGHK 135
              79********9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355837494IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-97495IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-874138No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5114138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.051116138IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-12116140IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346116138IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MALEALNSPR LVDDSSRFNG VEQWTKGKKR SKRSRTDHHN NRLTEEEYLA FCLMLLARDG  60
GDLDSVTAKE KPGYKCGVCY KTFSSYQALG GHKASQQGLY GGGDIDKTLS TAVKSHVCSV  120
CGKSFATGQA LGGHKRCHYD SGVSNSEGVG STSHVSSSSH RRFDLNITPV QEFSLEDEVM  180
SPMAMKKPRL K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap917368
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0082670.0AB008267.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863688.11e-141zinc finger protein AZF3
SwissprotQ9SSW01e-111AZF3_ARATH; Zinc finger protein AZF3
TrEMBLD7MQ001e-140D7MQ00_ARALL; Uncharacterized protein
STRINGscaffold_800768.11e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.11e-101zinc-finger protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]