PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917448
Common NameARALYDRAFT_917448
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 243aa    MW: 27678.1 Da    PI: 8.7229
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917448genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.28e-2862114358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  k +Y eC+kNhAa++G++a+DGCgEf++s+g   + ++l+CaACgCHRnFHR e+ 
       917448  62 KPHYGECRKNHAADIGTTAYDGCGEFVSSTG---EEDSLNCAACGCHRNFHREESI 114
                  679*************************955...56****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.8E-2764112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-2264113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.4165112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2365116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.2E-21174241IPR009057Homeodomain-like
SuperFamilySSF466892.97E-12179239IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-31184240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDEIIKPKKE ENSKRRRNAT AICRETGDHV HYPPTRRTKP KSTRAHHAPP PIIESILKVN  60
HKPHYGECRK NHAADIGTTA YDGCGEFVSS TGEEDSLNCA ACGCHRNFHR EESIPENGGV  120
TETVLEVLKI SSYQFRRIFC SPYGGGKSKG KKESYGGDRV VKDRFGGGDL AAEEEEEEEV  180
GRVKRLKTKF TAEQTEKMRG YAEKLRWKVR PEKREEVEEF CVEIGVNRKN FRIWMNNHKD  240
NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-131832411775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap917448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076471e-174AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankBT0028321e-174BT002832.1 Arabidopsis thaliana clone RAFL14-80-P06 (R20240) unknown protein (At5g42780) mRNA, complete cds.
GenBankBT0043791e-174BT004379.1 Arabidopsis thaliana clone U20240 unknown protein (At5g42780) mRNA, complete cds.
GenBankCP0026881e-174CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankLN8526591e-174LN852659.1 Arabidopsis thaliana mRNA for homeobox protein 27 (AtHB27 gene), ecotype Columbia.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865484.11e-180zinc-finger homeodomain protein 13
SwissprotQ9FMY71e-133ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLD7MRF41e-179D7MRF4_ARALL; ATHB27
STRINGscaffold_800848.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-123homeobox protein 27