PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

917880

Common Name

ARALYDRAFT_917880

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 182aa MW: 20906.5 Da PI: 6.6557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
917880	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.2	1.1e-12	94	160	3	74
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 Y++Y+ + GF+vrk++ +k+ ++++++ +vCsk+g+r+e k ++ +++ tr+gC+a+++ ++k+g 917880 94 YKQYGGNHGFNVRKQRRTKK--QEKVVRLLYVCSKQGYRKEPKVI---KSYSQPITRCGCNAHMTCYLQKSG 160 9**********9986665..8889***********9877...999***********99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-9	94	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MESSHLNGHE IVRDSHYGSI LQVSDESGLL CQNSISEDEA SVSEFEEEDD IANKDDYVQT 60 EEVVALEENK VNEKKDELCI GMEFSSDEAA YIAYKQYGGN HGFNVRKQRR TKKQEKVVRL 120 LYVCSKQGYR KEPKVIKSYS QPITRCGCNA HMTCYLQKSG CVQMKMPFTC LRNWREKKRN 180 L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	917880

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010418903.1	1e-68	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	D7MN81	1e-132	D7MN81_ARALL; Uncharacterized protein
STRING	scaffold_801280.1	1e-133	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-09	FAR1 family protein

Link Out ? help Back to Top
Phytozome	917880
Entrez Gene	9300039