PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917909
Common NameARALYDRAFT_917909
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 112aa    MW: 12146.1 Da    PI: 10.913
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917909genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.8e-191144134
    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
            C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  917909 11 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 44
            ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-13556IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.453541IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-12645No hitNo description
Gene3DG3DSA:3.30.50.103.7E-15945IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.52E-121055No hitNo description
PROSITE patternPS0034401136IPR000679Zinc finger, GATA-type
PfamPF003203.4E-171145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MKTRAQDKKT CADCGTSKTP LWRGGPAGPK SLCNACGIRN RKKRRGTEDN KKLKKSSSGG  60
GNPKLGESLK QRLMDFGITK RSTVEKQRRK LGEEEQAAVL LMALSYGSVY A*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap917909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0293381e-129BT029338.1 Arabidopsis thaliana At5g49300 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865725.24e-76GATA transcription factor 16
SwissprotQ9FJ102e-65GAT16_ARATH; GATA transcription factor 16
TrEMBLD7MNQ82e-74D7MNQ8_ARALL; Uncharacterized protein
STRINGscaffold_801309.13e-75(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-55GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]