PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918037
Common NameARALYDRAFT_918037
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 254aa    MW: 29544.4 Da    PI: 5.3308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918037genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-15140246298
             EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SEE..EE CS
      B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.sefelvv 94 
             +k+l++sdv k  +rl+l+k+ ++e        ++++ ++++++++ ++g++ ++k+++++++++ vlt+GWkeFv   gL  + Dfv+  + ++ ++++ ++
  918037 140 KKQLMSSDVDKDqSRLMLSKEQVKEKmlpfleeSENPVKGVDVSVYGPDGKVQQMKFKFWNGDKTPVLTTGWKEFVAKCGLLmTSDFVTVWMFRHiETRNICF 242
             699*******9989***********9*****9988889************988888888*********************9989****987666667777777 PP

             EEE- CS
      B3  95 kvfr 98 
              ++r
  918037 243 AIHR 246
             7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.2E-9139244IPR003340B3 DNA binding domain
CDDcd100172.16E-15139246No hitNo description
SuperFamilySSF1019365.23E-17139245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16140236IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-9141247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MATLTDETTS LTQKEVNVAA ELLIELSQYQ PRYRRQSPEE KDTDDEEDID DEDDTDDEVA  60
STPLLQVSQA HQKKSRKREE KVSDKNQPKR VKKQSIMKIN IKDFSEETRR SIEVWYKAEI  120
DPQEIFGDNE VTRQFSKPIK KQLMSSDVDK DQSRLMLSKE QVKEKMLPFL EESENPVKGV  180
DVSVYGPDGK VQQMKFKFWN GDKTPVLTTG WKEFVAKCGL LMTSDFVTVW MFRHIETRNI  240
CFAIHRARFP LKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap918037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276650.0AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence.
GenBankAC0692510.0AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865781.10.0putative B3 domain-containing protein At4g03170
SwissprotQ9ZR141e-112Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MQ420.0D7MQ42_ARALL; Uncharacterized protein
STRINGscaffold_801437.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-114B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]